Detecting hypermutations in viral sequences with an emphasis on G→ A hypermutation

PP Rose, BT Korber - Bioinformatics, 2000 - academic.oup.com
PP Rose, BT Korber
Bioinformatics, 2000academic.oup.com
This program compares sequence sets to a reference sequence, tallies G→ A
hypermutations, and presents the results in various tables and graphs, which include
dinucleotide context, summaries of all observed nucleotide changes, and stop codons
introduced by hypermutation. Availability: www. hiv. lanl. gov/HYPERMUT/hypermut. html
Contact: pxr@ t10. lanl. gov or btk@ t10. lanl. gov
Abstract
Summary: This program compares sequence sets to a reference sequence, tallies G → A hypermutations, and presents the results in various tables and graphs, which include dinucleotide context, summaries of all observed nucleotide changes, and stop codons introduced by hypermutation.
Availability: www.hiv.lanl.gov/HYPERMUT/hypermut.html
Contact: pxr@t10.lanl.govor btk@t10.lanl.gov
Oxford University Press