Mapping quantitative trait loci in oligogenic models

HK Tang, D Siegmund - Biostatistics, 2001 - academic.oup.com
HK Tang, D Siegmund
Biostatistics, 2001academic.oup.com
We discuss strategies for mapping quantitative trait loci with emphasis on certain issues of
study design that have recently received attention: eg genotyping only selected pedigrees
and the comparative value of large pedigrees versus sib pairs. We use a standard variance
components model and a parametrization of the genetic effects in which the 'segregation'
parameters are locally orthogonal to the 'linkage'parameters. This permits simple explicit
expressions for the expectation of the score statistic, which we use to compare the power of …
Abstract
We discuss strategies for mapping quantitative trait loci with emphasis on certain issues of study design that have recently received attention: e.g. genotyping only selected pedigrees and the comparative value of large pedigrees versus sib pairs. We use a standard variance components model and a parametrization of the genetic effects in which the ‘segregation’ parameters are locally orthogonal to the ‘linkage’ parameters. This permits simple explicit expressions for the expectation of the score statistic, which we use to compare the power of different strategies. We also discuss robustness of the score statistic.
Oxford University Press